List of software I recommend for a graduate student or a postdoc.
Affinity Suite - Photo, Designer, and Publisher. Extremely user friendly, powerful, and loaded with tutorials. Generally can be found on sale. Major benefit is lifetime license with no monthly subscription.
ConSurf Web Server - Visual representation of conserved regions of proteins
Maxchelator - Series of programs for determining free metal concentrations. Las updated 2019.
PyChelator - An improved, easy to use chelator software. Freestanding in browser or part of Google Colab Notebook.
Ligplot - Generation of ligand-protein interaction diagrams
Check My Metals - Validation of metal binding sites in maps (2Fo-Fc or cryoEM) and models
Core material for anyone interested in the subject. Extremely detailed lectures, and in some ways what I am trying to emulate with my website.
Similar to the Jensen lectures and good for understanding the hardware involved in SPA.