PyMOL was originally designed by Warren Delano and distributed under a copyleft arrangement, with students and individuals able to use the software for free while larger groups subscribed. After his unexpected death in 2009, Schrodinger took charge of PyMOL. PyMOL-OSS is the free version, with packages readily available on Ubuntu (i.e. Snapcraft) and student versions available for download on Windows/Mac. These versions lag behind the official version of PyMOL3, which is $99 a year for graduate students and postdoctoral fellows. Installation is straightforward on all operating systems and will not be covered.

Important Links

PyMOL3 Installation and Purchasing

PyMOL Wiki

Official PyMOL3 Documentation

PyMOL3 Commands